С����Ƶ

As of June 23, 2025

Schoenle, A., Francis, O., Archibald, J. M., Burki, F., de Vries, J., Dumack, K., Eme, L., Florent, I., Hehenberger, E., Hoffmeyer, T. T., Irisarri, I., Lara, E., Leger, M. M., Lukeš, J., Massana, R., Mathur, V., Nitsche, F., Strassert, J. F. H., Worden, A. Z., Yurchenko, V., del Campo, J., & Waldvogel, A.-M. (2025). Protist genomics: Key to understanding eukaryotic evolution. Trends in Genetics.

Bergauer, K., Suffridge, C. P., Wittmers, F., Sudek, S., Giovannoni, S. J., & Worden, A. Z. (2025). Dark ocean archaeal and bacterial chemoautotrophs drive vitamin B1 production in oxygen minimum zones. ISME Communications, ycaf077.

Van Itallie, E., Sonnett, M., Kalocsay, M., Wühr, M., Peshkin, L., & Kirschner, M. W. (2025). Transitions in the proteome and phospho-proteome during Xenopus laevis development. Developmental Biology, 525, 155–171.

Wei, J., Wood, T. W. P., Flaherty, K., Fitch, O. E., Ali, S., Enny, A., Andrescavage, A., Brazer, D., Navon, D., Cohen, H. E., Gordon, D., Shanabag, A., Kuroda, S., Stewart, T. A., Braasch, I., & Nakamura, T. (2025). Distinct ossification trade-offs illuminate the shoulder girdle reconfiguration at the water-to-land transition. Nature Communications, 16(1), 4983.

Brock, M. T., Nozue, K., Kliebenstein, D. J., Ewers, B. E., Mackay, D. S., Maignien, L., Wang, D. R., Weinig, C., & Maloof, J. N. (2025). Characterization of transcriptional and metabolic responses to a complex plant growth-promoting soil inoculum. Plant Biology.

Hashim, M. S., Conte, M. H., Salter, M. A., Pedrosa-Pamies, R., Weber, J. C., Hayden, M. G., Wilson, R. W., Perry, C. T., Crowley, S. F., Dennis, P. F., Bish, D., & Subhas, A. V. (2025). Fish Carbonates in the North Atlantic and Their Potential Role in the Carbon Cycle. Global Biogeochemical Cycles, 39(6), e2024GB008387.

Johnson, M. D., Hammar, K., Beaudoin, D., Jiang, H., & Vďačný, P. (2025). High Grazing Rates of Marine Askenasia cf. stellaris on Mesodinium rubrum and Insights Into Its Taxonomic Status. Journal of Eukaryotic Microbiology, 72(4), e70014.

Joern, G. M., Pedrosa-Pàmies, R., Jiang, X., Liu, Z., & Bochdansky, A. B. (2025). Characterization of microbial biofilms on marine plastics: Community development and density implications for vertical transport dynamics. Frontiers in Marine Science, 12.

Stewart, R. G., Marquis, M. J., Jo, S., Harris, B. J., Aberra, A. S., Cook, V., Whiddon, Z., Yarov-Yarovoy, V., Ferns, M., & Sack, J. T. (2025). A Kv2 inhibitor combination reveals native neuronal conductances consistent with Kv2/KvS heteromers. eLife, 13, RP99410.

Budy, P., Pennock, Casey. A., Messenger, S., Pehrson, H., Adler, E., Thiede, G. P., Christman, N. R., Crump, B. C., Giblin, A. E., & Kling, G. W. (2025). Rapid recovery of an arctic lake ecosystem from a pulse disturbance caused by thermokarst failure. Oecologia, 207(6), 82.

Tolentino, M., Walker, S. E., Spencer, G. E., & Carlone, R. (2025). The endocannabinoid system regulates both ependymoglial and neuronal cell responses to a tail amputation in the axolotl. Developmental Dynamics.

Hopkinson, C., Weston, N., Vallino, J., Garritt, R., & Forbrich, I. (2025). Comparative Metabolism and Blue Carbon Sequestration of Two Wetland-Dominated Estuaries. Ocean-Land-Atmosphere Research, 0091.

Irvine, T., Costello, J. H., Gemmell, B. J., Sutherland, K. R., Corrales-Ugalde, M., Townsend, J. P., & Colin, S. P. (2025). Ctenophores are a highly impactful predatory guild in open oceanic ecosystems. Current Biology.

Qian, G., Zhang, H., Liu, Y., Shribak, M., Eliceiri, K. W., & Provenzano, P. P. (2025). Computationally Enabled Polychromatic Polarized Imaging Enables Mapping of Matrix Architectures that Promote Pancreatic Ductal Adenocarcinoma Dissemination. The American Journal of Pathology.

Tucker, S. J., Rii, Y. M., Freel, K. C., Kotubetey, K., Kawelo, A. H., Winter, K. B., & Rappe, M. S. (2025). Seasonal and spatial transitions in phytoplankton assemblages spanning estuarine to open ocean waters of the tropical Pacific. Limnology and Oceanography.

Walker, S. E., Yu, K., Burgess, S., & Echeverri, K. (2025). Neuronal activation in the axolotl brain promotes tail regeneration. npj Regenerative Medicine, 10, 22.

Yoshino, J., Mali, S. S., Williams, C. R., Morita, T., Emerson, C. E., Arp, C. J., Miller, S. E., Yin, C., Thé, L., Hemmi, C., Motoyoshi, M., Ishii, K., Emoto, K., Bautista, D. M., & Parrish, J. Z. (2025). Drosophila epidermal cells are intrinsically mechanosensitive and modulate nociceptive behavioral outputs. eLife, 13, RP95379.

Liu, J., Costello, J., & Kanso, E. (2025). Flow physics of nutrient transport drives functional design of ciliates. Nature Communications, 16, 4154.

Boudreau, V., Albright, A. R., Larson, B. T., Gerbich, T. M., Fadero, T., Yan, V., Lucas-DeMott, A., Yung, J., Moulin, S. L. Y., Descovich, C. P., Slabodnick, M. M., Burlacot, A., Wang, J. R., Niyogi, K. K., & Marshall, W. F. (2025). The cell biology and genome of Stentor pyriformis, a giant cell that embeds symbiotic algae in a microtubule meshwork. Molecular Biology of the Cell, 36(4).

Chitsaz, M., Yang, L., Rayes-Danan, R., Savari, O., Li, B., Shribak, M., Eliceiri, K., & Loeffler, A. (2025). Polychromatic Polarization Microscopy Differentiates Collagen Fiber Signatures in Benign Pancreatic Tissue and Pancreatic Ductal Adenocarcinoma. Modern Pathology, 100768.

Stekoll, M., Lindell, S., Goudey, C. A., Kite-Powell, H. L., Bailey, D., Barbery, K., Roberson, L., Peeples, T., Mangini, N., Pryor, A., Meyer, A., & Yarish, C. (2025). Development of scalable coastal and offshore kelp farming for marine biomass production. Journal of the World Aquaculture Society, 56(2), e70017.

Vargas, K. J., Wallace, J. N., Mooney, I., Owen, D. J., & Morgan, J. R. (2025). α-Synuclein interacts directly with AP2 and regulates its binding to synaptic membranes. Journal of Biological Chemistry, 108502.

Giacomini, J. J., Torres-Morales, J., Dewhirst, F. E., Borisy, G. G., & Mark Welch, J. L. (2025). Spatial ecology of the Neisseriaceae family in the human oral cavity. Microbiology Spectrum, e03275-24.

Henthorn, D., Wilson, S., Tank, R. K., Mallard, W., Fadero, T., Gao, R., & Garner, E. C. (2025). Bacillus subtilis twisting arises from torsional stress established by cell wall insertion and released by hydrolase-mediated cell wall cleavage. Molecular Biology of the Cell, 36(5), ar56.

Sebastian, H., Robador, A., Ray, D., Angermeyer, A., D’Hondt, S., Huber, J. A., & Finkel, S. E. (2025). Identifying potential nutrient acquisition mechanisms for long-term survival: Adaptive evolution of Halomonas isolated from subseafloor crustal fluids. Frontiers in Microbiology, 16, 1511421.

Shekhar, S., Guo, H., Colin, S. P., Marshall, W., Kanso, E., & Costello, J. H. (2025). Cooperative hydrodynamics accompany multicellular-like colonial organization in the unicellular ciliate Stentor. Nature Physics.

Kananen, K., Veseli, I., Quiles Pérez, C., Miller, S., Eren, A., & Bradley, P. (2025). Adaptive adjustment of profile HMM significance thresholds improves functional and metabolic insights into microbial genomes. Bioinformatics Advances, 5(1), vbaf039. 

Valiela, I., Chenoweth, K., & Day, J. (2025). Meta-analysis of vegetation responses to experimental nitrogen enrichments done in salt marshes under different sea level rise regimes reveal interaction of N supply and sea level rise. Science of The Total Environment, 975, 179198. 

Zottoli, S. J., Kaczmarek, L. K., & Faber, D. S. (2025). Multiple Neuronal Processes, Including the Mauthner Axon, Form a Multi-Axial Fiber Within a Common Myelin Sheath in the Central Nervous System of Adult Lungfishes, Protopterus annectens, Lepidosiren paradoxa, and Neoceratodus forsteri. Journal of Morphology, 286(4), e70042. 

Griffin, C., Coppenrath, K., Khan, D., Lin, Z., Horb, M., & Saint-Jeannet, J.-P. (2025). Deletion of sf3b4 causes splicing defects and gene dysregulation that disrupt craniofacial development and survival. Disease Models & Mechanisms, 18(3).

Liu, J., Burkart, T., Ziepke, A., Reinhard, J., Chao, Y.-C., Tan, T. H., Swartz, S. Z., Frey, E., & Fakhri, N. (2025). Light-induced cortical excitability reveals programmable shape dynamics in starfish oocytes. Nature Physics, 1–10.

Ribeiro, R., Null, R., & Özpolat, B. (2025). Sex-biased gene expression precedes sexual dimorphism in the agonadal annelid Platynereis dumerilii. Development.

Simon, S., Soares, A., Bornemann, T., Lange, A., Griesdorn, L., Fuentes, A., Dieckmann, M., Krok, B., Ruff, S., Hügler, M., Moraru, C., & Probst, A. (2025). Inferring replication states of bacteria and viruses in enrichment cultures via long-read sequencing. ISME Communications, ycaf041.

Loh, L., DeMarr, K., Tsimba, M., Heryanto, C., Berrio, A., Patel, N., Martin, A., McMillan, W., Wray, G., & Hanly, J. (2025). Lepidopteran scale cells derive from sensory organ precursors through a canonical lineage. Development, 152(5).

Pedrosa-Pamies, R., Conte, M. H., Weber, J. C., & Andersson, A. J. (2025). Hurricane-driven transport of bermuda reef carbonate platform sediments to the deep ocean. Journal of Geophysical Research: Oceans, 130(3), e2023JC020500.

Stegen, J., Burgin, A., Busch, M., Fisher, J., Ladau, J., Abrahamson, J., Kinsman-Costello, L., Li, L., Chen, X., Datry, T., McDowell, N., Tatariw, C., Braswell, A., Deines, J., Guimond, J., Regier, P., Rod, K., Bam, E., Fluet-Chouinard, E., Forbrich, I., … Patel, K. (2025). Reviews and syntheses: Variable inundation across Earth’s terrestrial ecosystems. Biogeosciences, 22(4), 995–1034.

Conte, M., Pedrosa-Pamies, R., Weber, J., & Johnson, R. (2025). The climatology of the deep particle flux in the oligotrophic western North Atlantic gyre, 1978–2022. Progress In Oceanography, 103433.

Damian-Serrano, A., Walton, K., Bishop-Perdue, A., Bagoye, S., Du Clos, K., Gemmell, B., Colin, S., Costello, J., & Sutherland, K. (2025). Colonial architecture modulates the speed and efficiency of multi-jet swimming in salp colonies. Journal of Experimental Biology.

Hoffmann, C., Ruff, K., Edu, I., Shinn, M., Tromm, J., King, M., Pant, A., Ausserwöger, H., Morgan, J., Knowles, T., Pappu, R., & Milovanovic, D. (2025). Synapsin condensation is governed by sequence-encoded molecular grammars. Journal of Molecular Biology, 168987.

Hoffmann, C., Ruff, K., Edu, I., Shinn, M., Tromm, J., Pant, A., Ausserwöger, H., Morgan, J., Knowles, T., Pappu, R., & Milovanovic, D. (2025). BPS2025—Sequence-encoded molecular grammar governs the formation of synaptic condensates. Biophysical Journal, 124(3), 562a.

Jiang, Q., Cao, L., Han, Y., Li, S., Zhao, R., Zhang, X., Ruff, S., Zhao, Z., Peng, J., Liao, J., Zhu, B., Wang, M., Lin, X., & Dong, X. (2025). Cold seeps are potential hotspots of deep-sea nitrogen loss driven by microorganisms across 21 phyla. Nature Communications, 16(1), 1646.

Martinez, A., Hall, L., Fuentes, M., Putland, R., & Mensinger, A. (2025). The effects on anthropogenic sound on embryonic little skates (Leucoraja erinacea) and chain dogfish (Scyliorhinus rotifer). Journal of Experimental Biology.

Sullivan, H. L., Holtzer, J., Deegan, L. A., & Bowen, J. L. (2025). The Effect of runnels on salt marsh sediment dynamics, vegetation, and nitrogen cycling. Estuaries and Coasts, 48(3), 73.

Guimond, J., Grande, E., Michael, H., Pratt, D., Herndon, E., Noyce, G., Ward, N., Forbrich, I., Regier, P., Berens, M., & Arora, B. (2025). The hidden influence of terrestrial groundwater on salt marsh function and resilience. Nature Water, 1–10.

Martens, K., de Almeida, N. M., Shribak, M., Higuti, J., & Schön, I. (2025). On Cytheridella whitmani sp. Nov. (Crustacea, Ostracoda) from Cape Cod (Massachusetts, USA), with a reappraisal of the taxonomy of the genus. ZooKeys, 1224, 317–348.

Sow, S. L. S., van de Poll, W. H., Eveleth, R., Rich, J. J., Ducklow, H. W., Rozema, P. D., Luria, C. M., Bolhuis, H., Meredith, M. P., Amaral-Zettler, L. A., & Engelmann, J. C. (2025). Spatial and temporal variation of Antarctic microbial interactions: A study around the west Antarctic Peninsula. Environmental Microbiome, 20(1), 21.

McCoy, D. E., Burns, D. H., Klopfer, E., Herndon, L. K., Ogunlade, B., Dionne, J. A., & Johnsen, S. (2024). Heart cockle shells transmit sunlight to photosymbiotic algae using bundled fiber optic cables and condensing lenses. Nature Communications, 15(1), 9445.

 Zhao, Y., Zhou, R., Xie, B., Liu, C., Kalski, M., Cham, C., Jiang, Z., Koval, J., Weber, C., Rubin, D., Sogin, M., Crosson, S., Chen, M., Huang, J., Fiebig, A., Dalal, S., Chang, E., Basu, A., & Pott, S. (2025). Multiomic analysis reveals cellular, transcriptomic and epigenetic changes in intestinal pouches of ulcerative colitis patients. Nature Communications, 16(1), 904.

MacCord, K. (2025). Let’s talk about sex…cell lineages. Biological Theory, 1–14.

Thiruppathy, M., Teubner, L., Roberts, R., Lasser, M., Moscatello, A., Chen, Y.-W., Hochstim, C., Ruffins, S., Sarkar, A., Tassey, J., Evseenko, D., Lozito, T., Willsey, H., Gillis, J., & Crump, J. (2025). Repurposing of a gill gene regulatory program for outer ear evolution. Nature, 1–3.

Jimenez, V., Sudek, S., Eckmann, C., Bachy, C., Poirier, C., Wittmers, F., Santoro, A. E., Follows, M. J., Chavez, F. P., Shilova, I., & Worden, A. Z. (2024). Distinct phytoplankton assemblages underlie hotspots of primary production in the eastern North Pacific Ocean. Limnology and Oceanography.

Liu, J., Man, Y., Costello, J. H., & Kanso, E. (2025). Optimal feeding in swimming and attached ciliates. Journal of Fluid Mechanics, 1003, A26.

Longman, E. K., Merolla, S., Talke, S. A., Trautman, N., Largier, J. L., Harris, L., & Sanford, E. (2025). Evaluating historical changes in a mussel bed community in northern California. Scientific Reports, 15(1), 1930.

Handa, S., Biswas, T., Chakraborty, J., Ghosh, G., Paul, B. G., & Ghosh, P. (2025a). RNA control of reverse transcription in a diversity-generating retroelement. Nature.

Handa, S., Biswas, T., Chakraborty, J., Ghosh, G., Paul, B., & Ghosh, P. (2025b). RNA control of reverse transcription in a diversity-generating retroelement. Nature.